# Search with FASTA

Choose program and database(s) to query:
Program:
Databases: Blue databases and possibly DNA databases can be re-searched

Protein NBRF Annotated Protein Database (rel. 53) NBRF Protein Database (complete) NRL_3d structure database NCBI/Blast NR protein database NCBI/Blast NR protein database (seg) NCBI/Blast Swiss-Prot NCBI/BLAST Swiss-Prot (seg) OWL Nonredundant database Yeast Proteins | DNA Primate Rodent Other Mammals Vertebrates High Throughput Genomics Invertebrates Plants Bacteria | Structural RNA Viral Phage Synthetics EST sequences BLAST human ESTs BLAST mouse ESTs

Sequence type:
Protein DNA (both strands) DNA (forward only) DNA (rev-comp only)

Enter query sequence:
Subset range:

| Entrez protein sequence browser Entrez DNA sequence browser

Other options:

Ktup: | Protein matrix: | DNA matrix: | gap: | ext: | misc:

Output limits:
E(): Highest E(): scores: alignments:

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Copyright 1988, 1991, 1992, 1993, 1994 1995, 1997, 1999 by William R. Pearson and the University of Virginia. All rights reserved. The FASTA program and documentation may not be sold or incorporated into a commercial product, in whole or in part, without written consent of William R. Pearson and the University of Virginia.